Commit 156e4290 authored by Christoffer Flensburg's avatar Christoffer Flensburg

Update README.md

parent 7ece7168
# superFreq RNA paper
A public repo to reproduce the plots in the superFreq RNA-paper.
A public repo to reproduce the plots in the paper "Detecting copy number alterations in RNA-Seq using SuperFreq".
# How to run
......@@ -10,7 +10,8 @@ Download the repo, open R and
source('compareMethods.R')
```
You need superFreq, UpSetR and vioplot R-packages installed.
You need superFreq and vioplot R-packages installed. It is tested on R v3.6.0.
SuperFreq can be installed from [https://github.com/ChristofferFlensburg/superFreq](https://github.com/ChristofferFlensburg/superFreq).
# Expected output
The script takes about a minute or a few to run, and should produce the plots and supplementary plots in a new plots directory. It should match the already present expectedPlots directory.
The script takes about 5 minutes to run, and should produce the plots and supplementary plots in a new directory. It should match the already present expectedPlots directory.
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