Commit af305584 authored by Christoffer Flensburg's avatar Christoffer Flensburg

Update README.md

parent 113ad338
......@@ -13,5 +13,23 @@ source('compareMethods.R')
You need superFreq and vioplot R-packages installed. It is tested on R v3.6.0.
SuperFreq can be installed from [https://github.com/ChristofferFlensburg/superFreq](https://github.com/ChristofferFlensburg/superFreq).
SuperFreq can be installed with
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install()
BiocManager::install("GenomeInfoDb")
BiocManager::install("GenomicFeatures")
BiocManager::install("VariantAnnotation")
install.packages("devtools")
library(devtools)
install_github('ChristofferFlensburg/superFreq')
```
vioplot can be installed with
```
install.packages("vioplot")
```
# Expected output
The script takes about 5 minutes to run, and should produce the plots and supplementary plots in a new directory. It should match the already present expectedPlots directory.
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